SE3020202

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_339
  • Malus domestica
  • SE3020202
  • Mutator
  • MadM11
  • MDC008488.145:4140-4305
  • ATAGATATA
  • ATATAAGGRTGTGCTATCCACACACCMMTTTTTACTTCTCACACACACCTTGTTAATTTATGTCCGTTGATC

Secondary structure and sequence

TSD    TIR
5'



3'
ATAG     A  R    C           CMM            ACA        G   A   A  T      -   TTCTTCA
    ATATA GG TGTG TATCCACACAC   TTTTTACTTCTC   CACACCTT TTA TTT TG CCGTTG ATC       
    ||||| || |||| |||||||||||   ||||||||||||   |||||||| ||| ||| || |||||| |||       A
    TATAT CC ACAC ATAGGTGTGTG   AAAAATGAAGAG   GTGTGGAA AAT AAA GC GGCAGC TAG       
TATA     C  T    T           AGT            --A        A   C   A  T      C   CCTACTT

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End