Plant MITE

SE3050209

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_346
Malus domestica
SE3050209
PIF/harbinger
MadP7
MDC002465.109:11198-11436
TTA
AGAGCTCGTTTAGATGTGCTTTTAAAATGACCGAAAACGCTTTTGGTAAAAATATTTTTAG

Secondary structure and sequence

TSD TIR

5'

3'

TT    C      A                  CC     C        TA             AACTAATCTTTAATAAAAATGCAAGTAAATCAT    AAA    TAAAGTGCTTCCTAAGAGAAACACATAAAT
  AGAG TCGTTT GATGTGCTTTTAAAATGA  GAAAA GCTTTTGG  AAAATATTTTTAG                                 GGAA   CACT                              
  |||| |||||| ||||||||||||||||||  ||||| ||||||||  |||||||||||||                                 ||||   ||||                               
  TCTC AGTAAA CTACACGAAAATTTTATT  CTTTT TGAAAATC  TTTTATAAAAATC                                 AAGG   TTTT                              
AT    A      C                  AA     A        TC             --------------------------------C    ---    CGTGAACTTCACGAAAGACCTTATTCGTGG

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3050209

TTAGAGCTCGTTTAGATGTGCTTTTAAAATGACCGAAAACGCTTTTGGTAAAAATATTTTTAGAACTAATCTTTAATAAAAATGCAAGTAAATCATGGAAAAACACTTAAAGTGCTTCCTAAGAGAAACACATAAATGGTGCTTATTCCAGAAAGCACTTCAAGTGCTTTTGGAACCTAAAAATATTTTCTCTAAAAGTATTTTCAATTATTTTAAAAGCACATCCAAATGAACTCTTA

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