SE3030210

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_347
  • Malus domestica
  • SE3030210
  • hAT
  • Madh8
  • MDC005579.300:1778-2500
  • CTTCCGTC
  • CAGTGGCGGATCCACAGTGGGGTCGT

Secondary structure and sequence

TSD    TIR
5'



3' 
CTTCCGTC              -----------CA          -C     CGCACGACCCCTTGGAAACCATGGAAACAACCTTGAAGCTCCCATATGCGACCTCTTGGAGCTGTGGTCGTCGGGGTCGGAGGCACGCCAACTGTTCGACAAAAGCCCTGAACGAAAACTGGGCAGGAAGAGGAAGAAGAAGCAGCCCACTCAAATGAGCTTGGTTGTGTACTTGGTTGCATGCCTGTTTTTGTCAAGTGAATGATATTTATACATGCTACTTTTTATAACTCTATCCAGTTTAATTGGTCTTTCTGATAAAGAAATGATAGGGGTTGGAGGAGTGCTATATGAGAACGAGAACATTAAGAAGAT
        CAGTGGCGGATCCA             GTGGGGTCGT  GGGGT                                                                                                                                                                                                                                                                                                                           
        ||||||||||||||             ||||||||||  |||||                                                                                                                                                                                                                                                                                                                           A
        GTCACCGCCTAGGT             TACCCCAGTA  GCGCG                                                                                                                                                                                                                                                                                                                           
CTGCCTTC              CCTTTTTTACAAA          TC     CGTCGCGCTTTAAAAAAAAATCGGAGCAAACCATGAAGCCTGACATAACTGATAAAGTCAGCCTATTCTATTTATCAGCAGCCTATCATGATTGAGGTAATCAGCCCGCAAACCACGTCACAGCTTAATTAGACACGTACCTTGTTATTATTTCATATCCCTGACTGGGTTCTAAGACCGTATTTAGTGTAGTATTAAGCAAATACACCTAAGTACGTTCATCCAAAGTGAATTTGAAGGAGAAAATAACAGAACAATGACCGCATAGGTTTAAAAACGAAAGGGACTGTTGAACTACAAAGTTTAATTAAAGGC
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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