Plant MITE

SE3020214

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_351
Malus domestica
SE3020214
Mutator
MadM57
MDC015014.172:803-1062
ATATATTTG
ATATATTTGGGATTTGGATCCTRGCCGGATRCRTTTCATGGGAATCTTAAAAATCAACGCAC

Secondary structure and sequence

TSD TIR

5'

3'

         TTG      G      R       R R     -    A      AAA          ATAA  C       A         C A   C    -AAATGC            TAAAA T    TAAT
   ATATAT   GGATTT GATCCT GCCGGAT C TTTCA TGGG ATCTTA   ATCAACGCAC    AT GTTGATT AAAATCGTG G TCA AATT       TTTTTATATTTT     G AAAG    
   ||||||   |||||| |||||| ||||||| | ||||| |||| ||||||   ||||||||||    || ||||||| ||||||||| | ||| ||||       ||||||||||||     | ||||     
   TATATA   CCTAAA CTAGGA CGGTCTA G GGAGT ACCC TAGGAT   TAGTTGCGTG    TG CAACTAG TTTTAGCAC C GGT TTAA       AAAAATATAGAA     C TTTT    
GTT      ---      A      G       - A     G    C      CCC          CACC  T       A         T C   A    AAAAGAA            -TGTG C    GCTC

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3020214

ATATATTTGGGATTTGGATCCTRGCCGGATRCRTTTCATGGGAATCTTAAAAATCAACGCACATAAATCGTTGATTAAAAATCGTGCGATCACAATTAAATGCTTTTTATATTTTTAAAAGTAAAGTAATCTCGTTTTCCGTGTAAGATATAAAAAAAGAAAAAATTATGGCCTCACGATTTTAGATCAACTGTCCACGTGCGTTGATCCCTAGGATCCCCAGTGAGGAGATCTGGCGAGGATCAAAATCCATATATTTG

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