Plant MITE

SE3020215

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_352
Malus domestica
SE3020215
Mutator
MadM1
MDC020954.131:1534-1722
TAGAGACTT
CTTGAGAAATGCTAAGGAGACCTTCTCAAAGT

Secondary structure and sequence

TSD TIR

5'

3'

TAGAGA            T        C      -    AGGAC    C       CTA        -----------      TTAACGT    T  CAT
      CTTGAGAAATGC AAGGAGAC TTCTCA AAGT     TCTC ATGAATT   TGTCACCT           CACAGT       TAAT TT   
      |||||||||||| |||||||| |||||| ||||     |||| |||||||   ||||||||           ||||||       |||| ||    
      GAACTCTTTACG TTCCTTTG AAGAGT TTCA     AGAG TACTTAA   ACAGTGGA           GTGTTA       ATTA AA   
TTCAGA            T        A      A    CTATA    A       AAG        ATACAAAAATC      -TAAAAT    C  CCA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3020215

TAGAGACTTGAGAAATGCTAAGGAGACCTTCTCAAAGTAGGACTCTCCATGAATTCTATGTCACCTCACAGTTTAACGTTAATTTTCATACCAACATTATAAAATATTGTGCTAAAAACATAAGGTGACAGAAAATTCATAGAGAATATCACTTATGAGAAAGTTTCCTTTGCATTTCTCAAGAGACTT

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