SE3020217

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_354
  • Malus domestica
  • SE3020217
  • Mutator
  • MadM58
  • MDC005188.351:39764-39955
  • GGTTAATAA
  • GTTAATAAGGAGTAGGATTTTCTCCCCGCTATCCCTTTTTATCCCCTCTT

Secondary structure and sequence

TSD    TIR
5'



3' 
 G      AA                ----  --CG  A  - - T              CTCACACTTTTT      CTT    TCTATATAAAAAATTCAAAAC
  GTTAAT  GGAGTAGGATTTTCTC    CC    CT TC C C TTTTATCCCCTCTT            TTTTGT   ATTT                     
  ||||||  ||||||||||||||||    ||    || || | | ||||||||||||||            ||||||   ||||                      
  TAATTG  CCTCATCCTAAGAGAG    GG    GA AG G G AAGGTAGGGGAGGA            ATTTGC   ACGC                     
TA      -G                TAAA  ATTA  G  A T T              ---------TAA      -CA    TAATGCAGTGCAGATGTAGAA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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