Plant MITE

SE3020219

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_356
Malus domestica
SE3020219
Mutator
MadM10
MDC003890.319:12310-12510
ATAGTTGGT
GTGGAGGAGGATTCTCTCCCCTCCTATTCTCAT

Secondary structure and sequence

TSD TIR

5'

3'

ATAGTTG                  C       ------       CCCC        RKTCT   CAC -  ---  GTTTTTTGTCTTATTGTCTTTATAAAAAAA
       GTGGAGGAGGATTCTCTC CCTCCTA      TTCTCAT    TTCCCTCC     TCT   A TA   TT                              
       |||||||||||||||||| |||||||      |||||||    ||||||||     |||   | ||   ||                               
       TACCTTCTCCTAAGAGAG GGAGGAT      GAGAGTA    AAGGGAGG     AAC   T GC   TG                              
TGGTTGA                  A       TAAAGA       ATAC        --ATA   --- T  CAA  CCAATCAGTGCAGTTGTAGATTATAACTAA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3020219

ATAGTTGGTGGAGGAGGATTCTCTCCCCTCCTATTCTCATCCCCTTCCCTCCRKTCTTCTCACATATTGTTTTTTGTCTTATTGTCTTTATAAAAAAAAATCAATATTAGATGTTGACGTGACTAACCGTAACCGTTCAAATAGGAGGGAACATAATGAGAGAGAAATTAGGAGGAGAGAGAATCCTCTTCCATAGTTGGT

Copy Cancel