Plant MITE

SE3020220

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_357
Malus domestica
SE3020220
Mutator
MadM11
MDC023117.65:1956-2119
TTAGTTTAG
AGGGGTGTGATATCCACACACCCTTTTTTACTTCTCTCACACCCTTTTAATTTT

Secondary structure and sequence

TSD TIR

5'

3'

TTAGTTT         A             T             C         --       CGAC    GGATCG    AATTA
       AGGGGTGTG TATCCACACACCC TTTTTACTTCTCT ACACCCTTT  TAATTTT    TGTC      GATG     
       ||||||||| ||||||||||||| ||||||||||||| |||||||||  |||||||    ||||      ||||      
       TCCCCACAC ATAGGTGTGTGGG AAAAATGAAGAGG TGTGGGGAA  ATTAAAA    ACAG      CTAT     
ATTTGAT         G             T             A         CA       ----    --GAAA    AAGAA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3020220

TTAGTTTAGGGGTGTGATATCCACACACCCTTTTTTACTTCTCTCACACCCTTTTAATTTTCGACTGTCGGATCGGATGAATTAAAGAATATCAAAGGACAAAAATTAACAAGGGGTGTAGGAGAAGTAAAAATGGGTGTGTGGATAGCACACCCCTTAGTTTA

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