SE3020222

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_359
  • Malus domestica
  • SE3020222
  • Mutator
  • MadM59
  • MDC012539.189:23702-24242
  • TTACAATTA
  • AGGGTAATTCTATTAATACC

Secondary structure and sequence

TSD    TIR
5'



3' 
TTACAATT     AA  C          CTACAATC     AATACATCCCATAATTTTATTTTTTCAGTTAAATTTTCGTTTTTACCCTGATGAATTAAGTTTTGAAGTCCAAAATAAACCCCCATCCACCCCCTTATGTCGGCTACCAACCACCACAGTGTCTAGGCAAAAAATCTCAGCCACTCGCCATGCTCGCTCTCTCTCTCTCTCTCTCCATATATATATATCCAATCACCAGCCACTCGCTAGTAGGTAATAGGGAATTGGGAGAT
        AGGGT  TT TATTAATACC        TTATG                                                                                                                                                                                                                                         
        |||||  || ||||||||||        |||||                                                                                                                                                                                                                                          
        TCCCA  AA ATAATTGTGG        GTGTA                                                                                                                                                                                                                                         
ATTAACAT     AC  A          -------A     GATTTTACACAGAGATTTTAAAGTCAAAACAGGAGGTAAAAAGACTTCGGTGGGGTAGTGATATCTGTTTACTGACGTTTTTTCGATCGAGTTACCGGTGCCCGGTGGGTATATTCTCCATAGGTAGTAGCTATAGTCGTATCGGTTTTTGGGAGGTGCAGCGTCTTCAACTGTAGGTTCTGGCTGAGAGATTGTCTAGCTCTTAACGGGTTGTAAGAACTAAGTGTGTGGGG
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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