SE3020225

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_362
  • Malus domestica
  • SE3020225
  • Mutator
  • MadM42
  • MDC011871.483:3806-4409
  • ACAAAAATT
  • TGGGAAATTTGGAAAAATAACCAAATTTTAGACCCTATATAGAATTATAGCCACCATATTAATTTTATGATAATTATAACCAAAACTTGATGTAAAAGTACTAATATACCCTTAATATTAGGGTTTCTCACAACAATCAAAACAAACCTTTAAACTATCCTAAAATG

Secondary structure and sequence

TSD    TIR
5'



3' 
ACAAAAAT                                C C                      A                                          C                             C        A    -               C       AAAAATTAATCTTCATCACTTTTTTGT  TCACTGTTCACTTTGCATATGCAATTTCGTATTCTTTCTTTATCCACTGGAAAAATATATTGGAATATATGCAATTTAGTCAGTGAAACACTAAATCCAAGTATC
        TGGGAAATTTGGAAAAATAACCAAATTTTAGA C TATATAGAATTATAGCCACCAT TTAATTTTATGATAATTATAACCAAAACTTGATGTAAAAGTA TAATATACCCTTAATATTAGGGTTTCTCA AACAATCA AACA AACCTTTAAACTATC TAAAATG                           TT                                                                                                         
        |||||||||||||||||||||||||||||||| | |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||| |||| ||||||||||||||| |||||||                           ||                                                                                                          
        ACCCTTTAAACCTTTTTATTGGTTTAAAATCT G GTATATCTTAATATTGGTGGTA AATTAAAATACTATTAATATTGGTTTTGAACTACATTTTCAT ATTATATGGGAATTATGATCCCAAAGAGT TTGTTGGT TTGT TTGGGAATTTGATGG ATTTTAC                           CG                                                                                                         
TTAAAAAC                                A A                      A                                          A                             A        G    G               A       ---------------AACTCCTAATGA  TCTAACTTCGGTGACTTAATTGAAAGAGAAATTAATCGTTCTGTTGGATACTCTTACAAGAAGTCTTCCATGATTAAGGTATCGATTAATAATAAAAACATTAAT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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