Plant MITE

SE3020229

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_366
Malus domestica
SE3020229
Mutator
MadM11
MDC001356.449:4167-4331
TTTTTTTAG
AGGGGTGTGATATCCACACACCCCTTTTTACTTCTCTCACACCCTTTTAATTTT

Secondary structure and sequence

TSD TIR

5'

3'

TTTTTTT         A             C   T                   --       TCGG  GTCG    AAATGAA
       AGGGGTGTG TATCCACACACCC TTT TACTTCTCTCACACCCTTT  TAATTTT    CC    GATC       
       ||||||||| ||||||||||||| ||| |||||||||||||||||||  |||||||    ||    ||||       T
       TCCCCATAC ATAGGTGTGTGGG AAA ATGAAGAGGGTGTGGGGAA  ATTAAAG    GG    CTAG       
ATTTTTT         G             A   T                   CA       -ATA  -AAA    AAGAAAT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3020229

TTTTTTTAGGGGTGTGATATCCACACACCCCTTTTTACTTCTCTCACACCCTTTTAATTTTTCGGCCGTCGGATCAAATGAATTAAAGAAGATCAAAGGATAGAAATTAACAAGGGGTGTGGGAGAAGTATAAAAGGGTGTGTGGATAGCATACCCCTTTTTTTA

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