SE3020230

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_367
  • Malus domestica
  • SE3020230
  • Mutator
  • MadM43
  • MDC013517.268:1079-1315
  • GGGAAATGT
  • TGTCGGACAAGGATTGTCTGCCTCTACTTCCGGTGCTTTTTTCGTG

Secondary structure and sequence

TSD    TIR
5'



3' 
GGGAAA G                    -                -     G  ACATTTTG              A               T           CTATTWA          TCTTAT
      T TCGGACAAGGATTGTCTGCC TCTACTTCCGGTGCTT TTTTC TG        TTTGTGTGGTCACG TTAAGCCACGTCAAT ATTTTATATTA       TTTTTTTTTA      
      | |||||||||||||||||||| |||||||||||||||| ||||| ||        |||||||||||||| ||||||||||||||| |||||||||||       ||||||||||       
      A GGCCTGTTCCTAACAGACGG AGGTGAAGGCCACGAG AGAAG AC        AAACACACCAGTGC AATTCGGTGCAGTTA TAAAATATAAT       AAAAAAAAAT      
CTGTAA G                    G                C     G  -------A              C               -           -------          CTATAT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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