Plant MITE

SE3020231

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_368
Malus domestica
SE3020231
Mutator
MadM43
MDC018680.466:10165-10403
TTAAAATAA
TAAGGACAAGGATTGTCTGCTCTCCAMTTCCGGTGCCCTCTCCGTGTCCTCCTGTTTGTGTARTCACGGTTRAGTCACGTCAACATTTTATATTACTATTTAT

Secondary structure and sequence

TSD TIR

5'

3'

TTAAAA                          MTT C          C        C      -G   AR        R        C  C           CTA     TTTTGTCTTA
      TAAGGACAAGGATTGTCTGCTCTCCA   C GGTGCCCTCT CGTGTCCT CTGTTT  TGT  TCACGGTT AGTCACGT AA ATTTTATATTA   TTTAT          
      ||||||||||||||||||||||||||   | |||||||||| |||||||| ||||||  |||  |||||||| |||||||| || |||||||||||   |||||           
      ATTCCTGTTCCTAACAGACGGGAGGT   G CCACGGGAGG GCATGGGA GACAAA  ACA  AGTGCCAA TCGGTGCA TT TAAAATATAAT   AAATA          
AATAAA                          GAR R          A        R      AY   CC        T        R  A           AAA     TATCTATATT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3020231

TTAAAATAAGGACAAGGATTGTCTGCTCTCCAMTTCCGGTGCCCTCTCCGTGTCCTCCTGTTTGTGTARTCACGGTTRAGTCACGTCAACATTTTATATTACTATTTATTTTTGTCTTATTATATCTATATAAAAAATAATATAAAATATTRACGTGGCTTAACCGTGACCACAYAAAACAGRAGGGTACGAGGAGGGCACCRGRAGTGGAGGGCAGACAATCCTTGTCCTTAAAATAA

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