Plant MITE

SE3020236

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_373
Malus domestica
SE3020236
Mutator
MadM53
MDC006297.369:1431-1645
CTGAACTCC
GGAATTGGATCCTCTCCGAGGCAATGCCTCGGGATCCTCTTGACCGAACAACATGAGCCGTTGAATTTTAATCRAATAGSTACAAACAGGGGGTCCCTCTAAAGT

Secondary structure and sequence

TSD TIR

5'

3'

CTGAACTCC             C          T                    GA    C   A CC      T   A   R   AGS     --------  ---     G
         GGAATTGGATCCT TCCGAGGCAA GCCTCGGGATCCTCTTGACC  ACAA ATG G  GTTGAA TTT ATC AAT   TACAA        AC   AGGGG 
         ||||||||||||| |||||||||| ||||||||||||||||||||  |||| ||| |  |||||| ||| ||| |||   |||||        ||   ||||| T
         CCTTAACCTAGGA AGGCTCCGTT CGGAGCCCTAGGAGGACTGG  TGTT TGC C  CAACTT AAA TAG TTG   ATGTT        TG   TCTCC 
CCTCAAGTC             -          T                    RC    A   C CA      K   C   G   ATG     AATAATAT  AAA     C

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3020236

CTGAACTCCGGAATTGGATCCTCTCCGAGGCAATGCCTCGGGATCCTCTTGACCGAACAACATGAGCCGTTGAATTTTAATCRAATAGSTACAAACAGGGGGTCCCTCTAAAGTTATAATAATTGTAGTAGTTGGATCAAAKTTCAACACCCCGTATTGTCRGGTCAGGAGGATCCCGAGGCTTTGCCTCGGAAGGATCCAATTCCCTGAACTCC

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