Plant MITE

SE3020244

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_381
Malus domestica
SE3020244
Mutator
MadM19
MDC021750.194:1779-1995
GTTATTTCC
CGGATCAGGATCCTCTCCTGAGCTAAGGGTGAGGATCCTCCTGAGCAAGTCCAACGGGCTGTTCAAATTTTTTTCAACGGCTACAAACARGGGGTMTCTCT

Secondary structure and sequence

TSD TIR

5'

3'

GTTATTTC              CT    A          A     C  C  A         AC                T        C     --------  --AR    T
        CGGATCAGGATCCT  CCTG GCTAAGGGTG GGATC TC TG GCAAGTCCA  GGGCTGTTCAAATTTT TTCAACGG TACAA        AC    GGGG 
        ||||||||||||||  |||| |||||||||| ||||| || || |||||||||  |||||||||||||||| |||||||| |||||        ||    |||| M
        GCCTAGTCCTAGGA  GGAC CGATTCCCAC CCTAG AG AC CGTTCGGGT  CCCGGTAAGTTTAAAA AGGTTGCC ATGTT        TG    TCTC 
CCTTTATT              SM    K          Y     T  T  A         AA                T        A     AATAATAT  AAAA    T

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3020244

GTTATTTCCGGATCAGGATCCTCTCCTGAGCTAAGGGTGAGGATCCTCCTGAGCAAGTCCAACGGGCTGTTCAAATTTTTTTCAACGGCTACAAACARGGGGTMTCTCTAAAAGTTATAATAATTGTAACCGTTGGATAAAATTTGAATGGCCCAATGGGCTTGCACATGATGATCCYCACCCTTAGCKCAGGMSAGGATCCTGATCCGTTATTTCC

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