Plant MITE

SE3020245

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_382
Malus domestica
SE3020245
Mutator
MadM19
MDC011012.138:25658-25874
CCTTTCTTC
GGATCAGGATTCTCTTATGAGCTAAGGGTAAGGATCCTCCTGAGCAAGCCCATTGGACCGTTGAAATTTTATTCAACGGTTATAAACAGAGGGTCCCTCT

Secondary structure and sequence

TSD TIR

5'

3'

CCTTTCTTC                A            A         C         CC     AC              T   C        ------------AC     G
         GGATCAGGATTCTCTT TGAGCTAAGGGT AGGATCCTC TGAGCAAGC  ATTGG  CGTTGAAATTTTAT CAA GGTTATAA              AGAGG 
         |||||||||||||||| |||||||||||| ||||||||| |||||||||  |||||  |||||||||||||| ||| ||||||||              ||||| T
         CCTAGTCCTAGGAGAG ACTCGATTCCCA TCCTAGGAG ACTCGTTCG  TAGCC  GTAACTTTAAAATA GTT CCAATGTT              TCTCC 
CTTCTTTCC                G            C         T         AA     CA              T   M        AATAATATTGAAAA     C

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3020245

CCTTTCTTCGGATCAGGATTCTCTTATGAGCTAAGGGTAAGGATCCTCCTGAGCAAGCCCATTGGACCGTTGAAATTTTATTCAACGGTTATAAACAGAGGGTCCCTCTAAAAGTTATAATAATTGTAACCMTTGTATAAAATTTCAATGACCCGATAAGCTTGCTCATGAGGATCCTCACCCTTAGCTCAGGAGAGGATCCTGATCCCCTTTCTTC

Copy Cancel