Plant MITE

SE3030247

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_384
Malus domestica
SE3030247
hAT
Madh8
MDC003136.610:3453-4098
AATGGTAG
CAGTGGCGGATCCA

Secondary structure and sequence

TSD TIR

5'

3'

AATGGTAG              AGAAATAATGTT   -             -  AG ----    GCAGCGCGAAATTTTTTTTAACAGAAACGGCATGCATATCGTCATTTCATCGGGTCTTGGTAGGATAGCACGACCAGCTACTCCAAAATCCTTGTTCAAAATCCTACATTCCAGCTCTACATCTGCAAAGAACAATGAAAAAATAAAATAAAAAGCAGAGCCTTTCGGTTCCACTAGCAAAGGCACAAAAATAAGGCTCTGTGCAAAAATTAGGTCGAAAGGACAAGCTTGGTATTTTTGTTTTGTTCAGACCTGCCCAGGACACGCT
        CAGTGGCGGATCCA            TGG GGGGTCATTAAGG AT  C    GCGC                                                                                                                                                                                                                                                                            
        ||||||||||||||            ||| ||||||||||||| ||  |    ||||                                                                                                                                                                                                                                                                             
        GTCACCGCCTAGGT            GTC CCCCAGTAACCCC GC  G    GGGG                                                                                                                                                                                                                                                                            
GATGGTAA              ------------   A             M  -- CGCT    AACCTTCGGTACCTTCGTTGGAATCTCTGGGGAACCTGACCACCACGCTGGGGACCACGCTGGGGCAAGCRACGTGTGGTTGACAAGCTGCTTTCCAGCAGCCAGACCCGTCCAACCTACTTCTTCTGCTTCCGCGACACCGCGGTCAAACAAAAAATTTTTTTTTGGACCCGTTTTTGCTGCAGCAAAAACCGGGTCCTTTAAAAAAAATTTACTGGACCGGTTTTGCTGCGCAAAAACCCGGTCCAAATTGTTTTTTTTTTACGGG

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3030247

AATGGTAGCAGTGGCGGATCCAAGAAATAATGTTTGGGGGGTCATTAAGGATAGCGCGCGCAGCGCGAAATTTTTTTTAACAGAAACGGCATGCATATCGTCATTTCATCGGGTCTTGGTAGGATAGCACGACCAGCTACTCCAAAATCCTTGTTCAAAATCCTACATTCCAGCTCTACATCTGCAAAGAACAATGAAAAAATAAAATAAAAAGCAGAGCCTTTCGGTTCCACTAGCAAAGGCACAAAAATAAGGCTCTGTGCAAAAATTAGGTCGAAAGGACAAGCTTGGTATTTTTGTTTTGTTCAGACCTGCCCAGGACACGCTGGGCATTTTTTTTTTGTTAAACCTGGCCCAAAAACGCGTCGTTTTGGCCAGGTCATTTAAAAAAAATTTCCTGGGCCAAAAACGACGTCGTTTTTGCCCAGGTTTTTTTTTAAAAAACAAACTGGCGCCACAGCGCCTTCGTCTTCTTCATCCAACCTGCCCAGACCGACGACCTTTCGTCGAACAGTTGGTGTGCARCGAACGGGGTCGCACCAGGGGTCGCACCACCAGTCCAAGGGGTCTCTAAGGTTGCTTCCATGGCTTCCAAGGGGTCGCGCGMCCCCAATGACCCCACTGTGGATCCGCCACTGAATGGTAG

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