SE3020249

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_386
  • Malus domestica
  • SE3020249
  • Mutator
  • MadM50
  • MDC015516.233:4928-5491
  • ACTCTACAA
  • GGGTAAACTGCCATTTGATCCCTTGAACTATTACTCCAGTTGAAATTGACCCCCTGAACTATTTTTTGGGTGAATTAACCCTTGAATTATTTGAAATCAGCCAATTGACCCCTTATCGGTAGATT

Secondary structure and sequence

TSD    TIR
5'



3'
ACTCTACAA       C   CA        C                     A      C         A      G             -        T          C             A   G      CAATCCACT                A  A         T    T         C          A           A     C  A      TTGAAAACAA         TAAT    ATTT  --T    TCCGT        TGTT
         GGGTAAA TGC  TTTGATCC TTGAACTATTACTCCAGTTGA ATTGAC CCCTGAACT TTTTTT GGTGAATTAACCC TTGAATTA TTGAAATCAG CAATTGACCCCTT TCG TAGATT         ATTTCGTCAAATTCAA GG AAATTAGTC TTTC TCATCAATT TTACTTGTCA CTATAACCACC ATGAA TT TGACAT          AATAATTTG    GACA    GA   ATGG     TATGTAAA    
         ||||||| |||  |||||||| ||||||||||||||||||||| |||||| ||||||||| |||||| ||||||||||||| |||||||| |||||||||| ||||||||||||| ||| ||||||         |||||||||||||||| || ||||||||| |||| ||||||||| |||||||||| ||||||||||| ||||| || ||||||          |||||||||    ||||    ||   ||||     ||||||||    T
         CCCATTT ACG  AAACTGGG GACTTGATAGTGGGGTCAACT TAACTG GGGATTTGA AAAAAA CCATTTAATTGGG AACTTGAT AATTTTAGTC GTTAATTGGGGAA GGC ATCTAA         TAAGGCAGTTTAAGTT CC TTTAATCAG AAAG AGTAGTTAA AATGAACAGT GATATTGGTGG TATTT AA ACTGTG          TTATTAAGT    TTGT    CT   TACT     GTATATTT    
AACATCTAA       A   CC        T                     A      C         C      A             G        T          A             C   A      CGCCTTAGT                A  G         T    C         T          C           C     T  A      TTCCTGCATC         --TT    ATAT  TAT    CTTTT        TTGG

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End