SE3020255

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_392
  • Malus domestica
  • SE3020255
  • Mutator
  • MadM41
  • MDC000259.241:3703-3959
  • AATGGCAAG
  • T

Secondary structure and sequence

TSD    TIR
5'



3' 
  AA  G  AG   --      TCCTCTCCTGAGCAGATGGAGAGGATCCTCCTGACCAAGGTCATCGGACCGTTCATTTTTTATCTAACGATTATAATTATTATAACTTTTAGAGGACTCCRCTGTTTGTA
    TG CA  GGA  TCAGGA                                                                                                              
    || ||  |||  ||||||                                                                                                               
    TT TT  TAT  ATATAA                                                                                                              
CGTA  -  --   AT      ACACTTATCATTCATGAAGAGGAACGGTAACCTAGTCCTAGGAGAGGACTCGTCTACCTCTCCTAGGAGAACTGGTCCGAGTAGCCCAGCAAGTAAAAAATAAGTTGCCA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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