Plant MITE

SE3020256

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_393
Malus domestica
SE3020256
Mutator
MadM67
MDC036712.11:1265-1422
TAGTTCTAT
CTATGGTAATGCTAGGAAGATCAAATTTGCAAACCAAAT

Secondary structure and sequence

TSD TIR

5'

3'

 TAGTT   T            A           GC         AACATGGTTG   A     A  T  TTACT       TGA
      CTA GGTAATGCTAGG AGATCAAATTT  AAACCAAAT          TTG TAATT GA TA     TAAGTAT   
      ||| |||||||||||| |||||||||||  |||||||||          ||| ||||| || ||     |||||||   T
      GAT CTATTACGATCC TCTAGTTTGAA  TTTGGTTTA          AAC GTTAA CT AT     ATTCGTG   
TATATT   C            C           AA         ----------   -     -  T  CCTTT       TAT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3020256

TAGTTCTATGGTAATGCTAGGAAGATCAAATTTGCAAACCAAATAACATGGTTGTTGATAATTAGATTATTACTTAAGTATTGATTATGTGCTTATTTCCTATTCAATTGCAAATTTGGTTTAAAAGTTTGATCTCCCTAGCATTATCCTAGTTATAT

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