SE3020259

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_396
  • Malus domestica
  • SE3020259
  • Mutator
  • MadM68
  • MDC011223.244:30768-30942
  • TAAAAAGAA
  • AGGGTAATGCTAAAGAGACAAAATTTGCAAACTAAATGATATGTCAGC

Secondary structure and sequence

TSD    TIR
5'



3' 
TAAAAAGA         C  AA     A     --------------  C   C           -----------------------   -  -AATAG     AG
        AGGGTAATG TA  GAGAC AAATT              TG AAA TAAATGATATG                       TCA GC      GAATG  
        ||||||||| ||  ||||| |||||              || ||| |||||||||||                       ||| ||      |||||   
        TCCCATTAC AT  CTCTG TTTAA              AC TTT ATTTACTGTAC                       AGT CG      TTTAC  
AAGAAAAA         T  CY     A     ATATTTATTTTAAA  A   A           TTYAAACTACTAACYCAATAATG   T  CAAYTA     AC
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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