Plant MITE

SE3050266

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_403
Malus domestica
SE3050266
PIF/harbinger
MadP9
MDC005697.439:26930-27144
TTA
TGGTTTGGTACTGAGGTGCTT

Secondary structure and sequence

TSD TIR

5'

3'

TTAGTAC          C  AG      TTATA    G    TATAAAAA    C -------------      AAAA   TGTTTGATAAACACTTAAAAATAGCTTATTTTCCCAGTTT
       TGGTTTGGTA TG  GTGCTT     AAAA TGGG        AAAG T             GAGCTA    AGG                                        
       |||||||||| ||  ||||||     |||| ||||        |||| |             ||||||    |||                                         
       ACCAAACCAT AC  CACGAA     ACTT TTTT        TTGA C             CACTTT    TCG                                        
ATTCCCA          A  AA      -----    -    --------    - AAAGACAACACGA      -TAT   AGTAAAAACGACGAAGTGCAAAAGTCAAAAAAAAGTGGGT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3050266

TTAGTACTGGTTTGGTACTGAGGTGCTTTTATAAAAAGTGGGTATAAAAAAAAGCTGAGCTAAAAAAGGTGTTTGATAAACACTTAAAAATAGCTTATTTTCCCAGTTTTGGGTGAAAAAAAACTGAAAACGTGAAGCAGCAAAAATGAGCTTATTTTCACAGCACAACAGAAACAGTTTTTTTTCAAAGCACAACAATACCAAACCAACCCTTA

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