SE3020268

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_405
  • Malus domestica
  • SE3020268
  • Mutator
  • MadM70
  • MDC004282.242:5384-5592
  • CTGATTGAC
  • GGGAAGAGATCGGTT

Secondary structure and sequence

TSD    TIR
5'



3' 
CTGATTGAC   A       -    C   TTTCTCCCCATCAAAAAGGSTCCGGATCAAATMATCCGGGYCGTTAMAATTTGATYTAASGATTAGAATTATTATA
         GGG AGAGATC GGTT GGA                                                                            
         ||| ||||||| |||| |||                                                                            A
         CCC TCTCTAG CCAG GGT                                                                            
CAGTTAGTC   C       A    -   GGTTTYAAGATCCTAGTTCACTAAGCCYAGCAACTTTAAATTAGTTTAGYAATGTTTGTTCTYTRTAGAGATTTTY
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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