Plant MITE

SE3020272

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_409
Malus domestica
SE3020272
Mutator
MadM5
MDC012058.102:220-406
GTGGGGTGG
GAGAGATTTTTCAGTATGATCGGAACACGAGATGGTAGATCATGTGT

Secondary structure and sequence

TSD TIR

5'

3'

 GTGGGGTG             GTA             A A     G         --CA     CAAATTGTGGGATATGTGTGTTAAAAAATT
         GAGAGATTTTTCA   TGATCGGAACACG G TGGTA ATCATGTGT    CTATA                              
         |||||||||||||   ||||||||||||| | ||||| |||||||||    |||||                              A
         CTCTTTAAAAAGT   ACTGGCCTTGTGC C ACTAT TGGTGCACA    TATAT                              
GTGGGGGTG             AGC             - C     G         AAAG     CCACCATTCTTTAAAATAAAAATTTCAATA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3020272

GTGGGGTGGAGAGATTTTTCAGTATGATCGGAACACGAGATGGTAGATCATGTGTCACTATACAAATTGTGGGATATGTGTGTTAAAAAATTAATAACTTTAAAAATAAAATTTCTTACCACCTATATGAAAACACGTGGTGTATCACCCGTGTTCCGGTCACGATGAAAAATTTCTCGTGGGGGTG

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