Plant MITE

SE3030273

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_410
Malus domestica
SE3030273
hAT
Madh6
MDC010864.380:12439-13232
CTAATTTG
TTGGAGTAGGGGTGGG

Secondary structure and sequence

TSD TIR

5'

3'

CTAAT  G    -    G    AAATTT     T    CGATTTA     --C AACCATACCAGTCGGCTCATAATGTTATGATATAGTTTTGGCATTTTTTTTTATAATCGGTTGGCATTTTACCGAACCGACAATTAATGACATGGCTTTGGTAATTGATTTTGTATGCCGGCGGTATGCCATACCTACCAATATATATATATATATATATATATATATATATATATATATTATTTGTCTATTTACATATTTTAGGTATTTTTTACATGCTTGACTCCTCAGTTTTAGGGTTTAGAAAATAAATGACTCCTTAGTTTTAGGGTTTAAAAAATATATGTAGATGTATATGATTCATGCCATAATAAATATAGAAAATATTGTTAACAAAATTGATAGCATGATGG
     TT GAGT AGGG TGGG      TGCCA AAAC       CCGAC   G                                                                                                                                                                                                                                                                                                                                                                 
     || |||| |||| ||||      ||||| ||||       |||||   |                                                                                                                                                                                                                                                                                                                                                                  
     AG TTTA TCCC ACCC      AGCCA ACCG       TTTGG   G                                                                                                                                                                                                                                                                                                                                                                 
    G  G    A    G    -----A     -    -------     CAC GTTTAAGGAACACGGTGGATTGTGGGTGTACATGTATTAATGGCTTTTAGTCAATGGCGATCGGTTAGTAGAAGAACGCCAACGGTTGTTAACCAAGTCGGTTTTAATAACCAACCAAGCCAACCATTTACCGTGTTGACCACCAAAGGTGAAAAAGGAGCGATAGAAGATCAAGGTTCCCGAGTTAAACTAAAGGTTTAACCCCACGAACAAACCAACGTAACACACCAAGTAAAACCCAATTAGGTACAACACGTGATCGCCAACTAACCGATCTGAGATAGTAGGATTTGTATTCGTTACGTATATGTAAGTTTTAGTATATATACATGCACATATATATCATAGTCATT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3030273

CTAATTTGGAGTAGGGGTGGGAAATTTTGCCATAAACCGATTTACCGACCGAACCATACCAGTCGGCTCATAATGTTATGATATAGTTTTGGCATTTTTTTTTATAATCGGTTGGCATTTTACCGAACCGACAATTAATGACATGGCTTTGGTAATTGATTTTGTATGCCGGCGGTATGCCATACCTACCAATATATATATATATATATATATATATATATATATATATATTATTTGTCTATTTACATATTTTAGGTATTTTTTACATGCTTGACTCCTCAGTTTTAGGGTTTAGAAAATAAATGACTCCTTAGTTTTAGGGTTTAAAAAATATATGTAGATGTATATGATTCATGCCATAATAAATATAGAAAATATTGTTAACAAAATTGATAGCATGATGGTTACTGATACTATATATACACGTACATATATATGATTTTGAATGTATATGCATTGCTTATGTTTAGGATGATAGAGTCTAGCCAATCAACCGCTAGTGCACAACATGGATTAACCCAAAATGAACCACACAATGCAACCAAACAAGCACCCCAATTTGGAAATCAAATTGAGCCCTTGGAACTAGAAGATAGCGAGGAAAAAGTGGAAACCACCAGTTGTGCCATTTACCAACCGAACCAACCAATAATTTTGGCTGAACCAATTGTTGGCAACCGCAAGAAGATGATTGGCTAGCGGTAACTGATTTTCGGTAATTATGTACATGTGGGTGTTAGGTGGCACAAGGAATTTGGCACGGTTTGCCAACCGAACCCAGCCCTAATTTGGAG

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