Plant MITE

SE3020278

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_415
Malus domestica
SE3020278
Mutator
MadM11
MDC004162.208:11135-11298
TTTTTCTTG
GGGGTGTGCTATCTACACACCCATTTTTACTTCTCACACACCCCTT

Secondary structure and sequence

TSD TIR

5'

3'

TTTTTCTT        C            CA      C    CA      CC  GTTAA      T      -   TTCTTCA
        GGGGTGTG TATCTACACACC  TTTTTA TTCT  CACACC  TT     TTTTTG CCGTTG ATC       
        |||||||| ||||||||||||  |||||| ||||  ||||||  ||     |||||| |||||| |||       A
        CCCCACAC ATAGGTGTGTGG  AAAAAT AAGA  GTGTGG  AA     AAAAAC GGCAGC TAG       
TTCTTTTT        T            AG      A    AG      AA  --ACC      C      C   TCTACTT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3020278

TTTTTCTTGGGGTGTGCTATCTACACACCCATTTTTACTTCTCACACACCCCTTGTTAATTTTTGTCCGTTGATCTTCTTCAATTCATCTGATCCGACGGCCAAAAACCAAAAAGGTGTGGAAGAAATAAAAAGAGGTGTGTGGATATCACACCCCTTTTTCTT

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