SE3020286

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_423
  • Malus domestica
  • SE3020286
  • Mutator
  • MadM50
  • MDC006057.412:7437-7999
  • ATAAATTTA
  • TAAATTTAGGGTAAACTGCGGTTTGATCCCCTAAACTATTACCCTAGTTGAAATTGACTCCTTGAACT

Secondary structure and sequence

TSD    TIR
5'



3'
A        -       C   G                      C                         ATTT      TA             T         A    CAAC             A      A          CG  GC                      AA                     TTT   G A           C     A   C  C         A      TTTAAAAA   ----  AGCATAATAAGAAACATAAAGAAA
 TAAATTTA GGGTAAA TGC GTTTGATCCCCTAAACTATTAC CTAGTTGAAATTGACTCCTTGAACT    TTTTTT  TAAATTAACCCCT GAACTATTT AAAT    CAGTTAACCCCTT CCGTTG GTTCCGTCCA  AT  TGTCAAATTCAAGGGCAAGTTA  TTTTTTATCATCAATTCTTAC   TTA T ATAACCACCAA AAAAT ATG CA GGGGACACA AATAAT        CTT    AT                        
 |||||||| ||||||| ||| |||||||||||||||||||||| |||||||||||||||||||||||||    ||||||  ||||||||||||| ||||||||| ||||    ||||||||||||| |||||| ||||||||||  ||  ||||||||||||||||||||||  |||||||||||||||||||||   ||| | ||||||||||| ||||| ||| || ||||||||| ||||||        |||    ||                        C
 ATTTAAAT CCCATTT ACG TAAACTGGGGGATTTGATAATG GGTCAACTTTAATTGAGGAACTTGA    AAAAAA  ATTTAATTGGGGA CTTGATAAA TTTA    GTTAATTGGGGAA GGTAAT TAAGGCAGGT  TA  ACAGTTTAAGTTCCCGTTTAAT  AGAAAATAGTAGTTAAGAATG   AGT A TATTGGTGGTT TTTTA TAC GT CTCCTGTGT TTATTG        TGT    CT                        
         A       A   G                      A                         ----      CC             -         C    TACA             C      C          AA  AA                      -C                     TAC   G A           A     A   T  A         A      CACATTAC   TACA  TTACAAGGCAATATATTTGCAAAC

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End