SE3020290

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_427
  • Malus domestica
  • SE3020290
  • Mutator
  • MadM43
  • MDC016593.293:940-1166
  • CTTTTTGAG
  • CTTTTTGAGGGACAAGGATTGCATGCCCTCTCACTTT

Secondary structure and sequence

TSD    TIR
5'



3' 
   TTT         G     CA        C     -C   TCCTCGCGTGCCCTCCTATTTTGTGTGGTCACGTTTAAGCAACGTCAACATTTTATATTAATTTTTTATAAA
CTT   GAGGGACAA GATTG  TGCCCTCT ACTTT  GTG                                                                        
|||   ||||||||| |||||  |||||||| |||||  |||                                                                         
GAG   TTCCCTGTT CTAAC  ATGGGAGG TGAAG  CAC                                                                        
   TTT         A     AG        A     AC   GGAAAGACAAACACACCAGTGCCAATTCAGTGCAGTTGTAAAACATAATGATAAGTTAAAACAGAATAATAG
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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