Plant MITE

SE3020298

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_435
Malus domestica
SE3020298
Mutator
MadM43
MDC010378.232:17964-18199
AATGAGACC
GGACTTGGATTGTCTGCCCTCCCATTTCGGTGTCCTTCCCGTGCCCTTCTGTTTTGTGTGGTCACAGTTAAGCCACGTTAATATTTTATATTATTTTTTT

Secondary structure and sequence

TSD TIR

5'

3'

AATGAGACC                     CC   TC                           G         A                             T    ATAAAAATA
         GGACTTGGATTGTCTGCCCTC  ATT  GGTGTCCTTCCCGTGCCCTTCTGTTTT TGTGGTCAC GTTAAGCCACGTTAATATTTTATATTATT TTTT         
         |||||||||||||||||||||  |||  ||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||| ||||         A
         CCTGAACCTAACAGACGGGAG  TAA  CCACGGGAAGGGCACGGGAGGACAAAA ACACCAGTG CAATTTGGTGCAGTTGTAAAATATAATGA AAAG         
CCAGAGTAA                     AT   CA                           -         C                             T    AAAAMAAAT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3020298

AATGAGACCGGACTTGGATTGTCTGCCCTCCCATTTCGGTGTCCTTCCCGTGCCCTTCTGTTTTGTGTGGTCACAGTTAAGCCACGTTAATATTTTATATTATTTTTTTATAAAAATAATAAAMAAAAGAAATAGTAATATAAAATGTTGACGTGGTTTAACCGTGACCACAAAAACAGGAGGGCACGGGAAGGGCACCACAATTAGAGGGCAGACAATCCAAGTCCAATGAGACC

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