SE3020300

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_437
  • Malus domestica
  • SE3020300
  • Mutator
  • MadM10
  • MDC016427.229:3659-3846
  • AACCATAAT
  • TGGACTAGGATTTTCTCCC

Secondary structure and sequence

TSD    TIR
5'



3' 
AACCATAA    C              CTTCTC   CTATACTCTTCCA             CATTCTC    -  - - CT TCTCTTTCTATAAAAAGTTAATA
        TGGA TAGGATTTTCTCCC      TTT             TCCTCTCTTCTTA       TATT TT G T  T                       
        |||| ||||||||||||||      |||             |||||||||||||       |||| || | |  |                        
        ACCT ATCCTAAGAGAGGG      AAA             AGGAGAGGAGGAT       AACT GC A T  G                       
TAATACCA    C              AAAAAA   -------------             ------A    T  C G -- CCAATTCGGTGCAGTTATAGAAT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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