SE3060314

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_451
  • Malus domestica
  • SE3060314
  • Mim
  • MadMi1
  • MDC002690.196:508-750
  • TATATAT
  • TATATATATATACAGGGAGTTTAAGGGGAGGGATCCCCATTTTTTCAAAAAAAATGGGGACACGCTCCCTACCGTTAGATTGACTTTAATGAAATTGTGTGGTTGAGATT

Secondary structure and sequence

TSD    TIR
5'



3' 
            C     --                          TC                       T      A    -     T                       AAAACACA
TATATATATATA AGGGA  GTTTAAGGGGAGGGATCCCCATTTTT  AAAAAAAATGGGGACACGCTCCC ACCGTT GATT GACTT AATGAAATTGTGTGGTTGAGATT        
|||||||||||| |||||  ||||||||||||||||||||||||||  ||||||||||||||||||||||| |||||| |||| ||||| |||||||||||||||||||||||         
ATATATATATAT TCCTT  CGAATTCCCCTCCCTAGGGGTAAAAA  TTTTTTTTACCCCTGTGCGAGGG TGGCAA CTAA CTGAA TTACTTTAGTACACCAACTCTAA        
            A     AA                          -T                       C      C    A     T                       GATACCGG
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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