SE3020317

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_454
  • Malus domestica
  • SE3020317
  • Mutator
  • MadM26
  • MDC016082.350:2448-2675
  • ATTTTTAAG
  • GGAATTGGATCCGCTCCGGAACCTAGTGTCCGGAGCCTAATGATCAATTCATAAGGGCCGC

Secondary structure and sequence

TSD    TIR
5'



3' 
ATTTTTAAG           C        A   -     C     C   AT           AA       TGATTGGTATGTAAAAGAAATA   ---   GTTGGTTTTGTGTGGTGGGCCA
         GGAATTGGATC GCTCCGGA CCT AGTGT CGGAG CTA  GATCAATTCAT  GGGCCGC                      AGA   GCC                      
         ||||||||||| |||||||| ||| ||||| ||||| |||  |||||||||||  |||||||                      |||   |||                       
         CCTTAACCTAG TGAGGTCT GGA TCACA GCCTC GAT  CTAGTTAAGTA  TCCGGCG                      GTC   TTG                      
GAATTTTTA           A        -   A     A     Y   CC           GA       ---------------TGTTTAA   AYG   CTAGGGATAATTGAGTAAAAGG
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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