Plant MITE

SE3020318

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_455
Malus domestica
SE3020318
Mutator
MadM22
MDC022078.141:17472-17688
AACCAATTA
GGAAGAGGATCTGATCCGGATCTTTCCCATCAAAGGCTCATGATCAAGTGATCTGGGCCGTTGAAATTTGATCTAACACCAACAAACAGAG

Secondary structure and sequence

TSD TIR

5'

3'

AACCAATTA             A                          T                                    AC A    ------------AC    GG
         GGAAGAGGATCTG TCCGGATCTTTCCCATCAAAGGCTCA GATCAAGTGATCTGGGCCGTTGAAATTTGATCTAAC  C ACAA              AGAG  
         ||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||  | ||||              ||||  C
         CCTTCTCCTAGAC AGGCCTAGAGAGGGTAGTTTCCGGGT CTAGTTCACTAGGTCCGGCAACTTTAAACTAGGTTG  G TGTT              TCTC  
ATTAACCAA             C                          C                                    CC A    AATATTATTAAAAA    TA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3020318

AACCAATTAGGAAGAGGATCTGATCCGGATCTTTCCCATCAAAGGCTCATGATCAAGTGATCTGGGCCGTTGAAATTTGATCTAACACCAACAAACAGAGGGCATCTCTAAAAATTATTATAATTGTAGCCGTTGGATCAAATTTCAACGGCCTGGATCACTTGATCCTGGGCCTTTGATGGGAGAGATCCGGACCAGATCCTCTTCCAACCAATTA

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