SE3020324

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_461
  • Malus domestica
  • SE3020324
  • Mutator
  • MadM57
  • MDC010214.698:4436-4701
  • CTAAGGAAA
  • GGATTTGGATCCTCGCTGGATCCCCTCACTGGGGATCCTAGGGATCAATACACGTGGACCGTTGATCAAAAATCGTGCAGCCACAATT

Secondary structure and sequence

TSD    TIR
5'



3' 
CTAAGGAAA                        C CA        -------C                             C           A -  A     TTTTCTTG           -TAC     A  AA
         GGATTTGGATCCTCGCTGGATCCC T  CTGGGGAT        CTAGGGATCAATACACGTGGACCGTTGAT AAAAATCGTGC G CC CAATT        TTTATATTTTT    GTAAA CG  
         |||||||||||||||||||||||| |  ||||||||        ||||||||||||||||||||||||||||| ||||||||||| | || |||||        |||||||||||    ||||| ||   
         CCTAAACCTAGGAGCGGCCTAGGG A  GACCCCTA        GATCCCTAGTTGTGTGCACCTGGCAACTA TTTTTAGTACG C GG GTTAA        AAATATAAAAA    CATTT GT  
AAGGGAATC                        A AG        TTCCCCTA                             T           C A  -     TTTACAAA           TTTT     C  CG
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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