Plant MITE

SE3020327

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_464
Malus domestica
SE3020327
Mutator
MadM41
MDC009782.580:2396-2610
TTAATTCAC
GGATTTGGATCCTCTCCTGAGCCAAWGGAGAGGATCCTCCTGACCAGCCATTGTGGGCCGTTGYATTTTCATRCAACYGCTATAA

Secondary structure and sequence

TSD TIR

5'

3'

TTAATTCAC                         -W  A                          G       Y     C  R    YGC     TTATTATAACTTT
         GGATTTGGATCCTCTCCTGAGCCAA  GG GAGGATCCTCCTGACCAGCCATTGTG GCCGTTG ATTTT AT CAAC   TATAA             
         |||||||||||||||||||||||||  || |||||||||||||||||||||||||| ||||||| ||||| || ||||   |||||             A
         CCTAAACCTAGGAGAGGATTCGGTT  CC CTTCTAGGAGGACTGGTCGGTAATAC CGGCAAC TAAAA TA GTTG   ATGTT             
CACTTAATT                         AR  -                          R       C     A  G    CTA     TAAACCCAGTAAA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3020327

TTAATTCACGGATTTGGATCCTCTCCTGAGCCAAWGGAGAGGATCCTCCTGACCAGCCATTGTGGGCCGTTGYATTTTCATRCAACYGCTATAATTATTATAACTTTAAAATGACCCAAATTTGTAATCGTTGGATAAAAATCCAACGGCRCATAATGGCTGGTCAGGAGGATCTTCCCRATTGGCTTAGGAGAGGATCCAAATCCTTAATTCAC

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