Plant MITE

SE3020330

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_467
Malus domestica
SE3020330
Mutator
MadM44
MDC000546.445:17046-17262
GCCGAAAAC
CGGATTTGGATCCTCTCCTGAGCAGAGGGTCTGAATCCTACTAACCAAGCAACACGGACCGTTGGATCAAAAATCCAACGGTTACAAACAGGGAATCCTT

Secondary structure and sequence

TSD TIR

5'

3'

GCCGAAAA                  T                    A  AAC       CAC                 A         ---------     ----AC    A
        CGGATTTGGATCCTCTCC GAGCAGAGGGTCTGAATCCT CT   CAAGCAA   GGACCGTTGGATCAAAA TCCAACGGT         TACAA      AGGG 
        |||||||||||||||||| |||||||||||||||||||| ||   |||||||   ||||||||||||||||| |||||||||         |||||      |||| A
        GCCTAAACCTAGGAGAGG CTCGTCTCCCAGGCTTAGGA GA   GTTCGTT   CCTGGCAACCTAGTTTT AGGTTGCCG         ATGTT      TTCC 
CAAAAGCC                  C                    C  CTA       ATA                 -         ATATTAATA     GAAAAT    T

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3020330

GCCGAAAACGGATTTGGATCCTCTCCTGAGCAGAGGGTCTGAATCCTACTAACCAAGCAACACGGACCGTTGGATCAAAAATCCAACGGTTACAAACAGGGAATCCTTTAAAAGTTGTAATAATTATAGCCGTTGGATTTTGATCCAACGGTCCATATTGCTTGATCAGCAGGATTCGGACCCTCTGCTCCGGAGAGGATCCAAATCCGCCGAAAAC

Copy Cancel