Plant MITE

SE3020335

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_472
Malus domestica
SE3020335
Mutator
MadM73
MDC006583.168:4077-4239
CAGTTTGTT
TTGGAAAATGCTAGGGAGACCATATTTT

Secondary structure and sequence

TSD TIR

5'

3'

CAGTTTGT    -AAA                A    GTAA    A   A            ---C  ---      CATA     TA
        TTGG    ATGCTAGGGAGACCAT TTTT    ACCA ATG TGTGGCAGTTGA    GG   TTGTTC    TTTAA  
        ||||    |||||||||||||||| ||||    |||| ||| ||||||||||||    ||   ||||||    |||||   
        GACC    TACGATCTCTCTGGTA AAAA    TGGT TAT ACATCGTCAACT    CC   AGCAAG    AGATT  
 TTTGTTT    CCGC                G    -AGC    A   A            ATTA  CTA      ----     TA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3020335

CAGTTTGTTTGGAAAATGCTAGGGAGACCATATTTTGTAAACCAAATGATGTGGCAGTTGACGGTTGTTCCATATTTAATAATTTAGAGAACGAATCCCATTATCAACTGCTACAATATATGGTCGAAAAAGATGGTCTCTCTAGCATCGCCCCAGTTTGTTT

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