Plant MITE

SE3020336

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_473
Malus domestica
SE3020336
Mutator
MadM7
MDC016122.368:16520-16735
AAAGAAAAT
TGGATCAGGATCCTCTCATGACCTTAAAAAACTGAGCTTGGTGAGTAGGAGATCGTGGTTGTTGAAATTTGATCAAACAGATACAA

Secondary structure and sequence

TSD TIR

5'

3'

AAAGAAAA                 A        A             G       GA                       CA   A A     -ACAAGG   CGTC
        TGGATCAGGATCCTCTC TGACCTTA AAAACTGAGCTTG TGAGTAG  GATCGTGGTTGTTGAAATTTGAT  AAC G TACAA       GAC    
        ||||||||||||||||| |||||||| ||||||||||||| |||||||  |||||||||||||||||||||||  ||| | |||||       |||    T
        ACCTAGTCCTAGGAGAG ACTGGAAT TTTTGACTCGGAT ACTCGTC  TTAGCACCGGCAACTTTAAACTA  TTG C ATGTT       TTG    
TAAAAGAA                 G        G             G       GG                       AG   C G     AATAATA   AAAA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3020336

AAAGAAAATGGATCAGGATCCTCTCATGACCTTAAAAAACTGAGCTTGGTGAGTAGGAGATCGTGGTTGTTGAAATTTGATCAAACAGATACAAACAAGGGACCGTCTAAAAGTTATAATAATTGTAGCCGTTGAATCAAATTTCAACGGCCACGATTGGCTGCTCAGTAGGCTCAGTTTTGTAAGGTCAGGAGAGGATCCTGATCCAAAGAAAAT

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