SE3050338

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_475
  • Malus domestica
  • SE3050338
  • PIF/harbinger
  • MadP6
  • MDC019260.152:42871-43193
  • TAA
  • AGGTACCGTTTGGTACGTGGGACGGGACGAAACGGAGTGAGACG

Secondary structure and sequence

TSD    TIR
5'



3' 
TA     C         C  ----           A         A    --      T   TCTCACGTTTGGTGCGCCTAAAACGGGTGGAACGCGCTGTTCTACGGGACGAGTTTCGGATGAATTTTCGTTTCGTCTCACCACCCTGGAACGACTCGTTCCA
  AGGTA CGTTTGGTA GT    GGGACGGGACG AACGGAGTG GACG  AGGTGT CCG                                                                                                       
  ||||| ||||||||| ||    ||||||||||| ||||||||| ||||  |||||| |||                                                                                                        
  TCCAT GCAAACCAT CG    CTCTGTCCTGC TTGCCTTAC CTGC  TGCCCT GCC                                                                                                       
AA     A         A  TCTG           C         C    CC      -   CTGTCCTGCCCTACTTTACCTCTCCCTCGTTTCTACGGGAGCCTACCTTTGTTCCTCCTTCTTCTTCCTCTGCTTCTCCAATATTAAAACACAAGGTGCCTAC
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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