Plant MITE

SE3020341

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_478
Malus domestica
SE3020341
Mutator
MadM47
MDC021631.164:9796-9964
GTTTTATGA
TTATGA

Secondary structure and sequence

TSD TIR

5'

3'

GTT      TGAGT   -     ACA    A         T               G                  A        CAAC
   TTATGA     AAA GCTAC   CTTA CCACCTAGT GTACCATCATTTGTA CATCTCTCTAATAGAGAT GGGCCTAC    
   ||||||     ||| |||||   |||| ||||||||| ||||||||||||||| |||||||||||||||||| ||||||||     
   AGTATT     TTT CGATG   GAAT GGTGGATCA CATGGTAGTAAATAT GTGGAGAGATTATCTCTA CCTGGGTG    
  T      TTGTT   A     --A    -         -               G                  C        TACG

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3020341

GTTTTATGATGAGTAAAGCTACACACTTAACCACCTAGTTGTACCATCATTTGTAGCATCTCTCTAATAGAGATAGGGCCTACCAACGCATGTGGGTCCCATCTCTATTAGAGAGGTGGTATAAATGATGGTACACTAGGTGGTAAGAGTAGCATTTTTGTTTTATGAT

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