Plant MITE

SE3020343

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_480
Malus domestica
SE3020343
Mutator
MadM24
MDC018931.297:3069-3296
AAAGTTAAA
GAATGAGGATCCTCT

Secondary structure and sequence

TSD TIR

5'

3'

AAAGTTAAA               CCGATCTTCT       C   CA       C         A             A         CTAATTTTCG     TACTATTTGTGT   A       TAA
         GAATGAGGATCCTCT          TTGTGAG ATT  GAAGATT TTTAATCGT TATGTTCATTGTA ATCGTGCGG          TCAGG            TCA TTTTAAA   
         |||||||||||||||          ||||||| |||  ||||||| ||||||||| ||||||||||||| |||||||||          |||||            ||| |||||||   A
         CTTACTCCTAGGAGA          AACACTC TAG  CTTTTAG AAATTAGCA ATGTAAGTAGCAT TAGTATGCC          AGTCT            AGT AAAATTT   
AAATTGGAA               ----------       C   AG       A         C             A         ----------     ----------TT   -       TTA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3020343

AAAGTTAAAGAATGAGGATCCTCTCCGATCTTCTTTGTGAGCATTCAGAAGATTCTTTAATCGTATATGTTCATTGTAAATCGTGCGGCTAATTTTCGTCAGGTACTATTTGTGTTCAATTTTAAATAAAATTTTTAAAATGATTTCTGACCGTATGATATACGATGAATGTACACGATTAAAAGATTTTCGAGATCCTCACAAAGAGGATCCTCATTCAAGGTTAAA

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