SE3020344

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_481
  • Malus domestica
  • SE3020344
  • Mutator
  • MadM19
  • MDC021605.181:22053-22268
  • CTCTCTCCC
  • GGACCAGGATCCTCTCCTGAGCAGATGGAGAGAATCCTCCTGACCAGGCCCATCGAGCCGTTCATTTTTTATCCAACGGTTA

Secondary structure and sequence

TSD    TIR
5'



3' 
CTCTCTCCC   C                            A          C           A                          CAAACAGGGGCC   CT
         GGA CAGGATCCTCTCCTGAGCAGATGGAGAG ATCCTCCTGA CAGGCCCATCG GCCGTTCATTTTTTATCCAACGGTTA            CTT  
         ||| |||||||||||||||||||||||||||| |||||||||| ||||||||||| ||||||||||||||||||||||||||            |||   
         CCT GTCCTAGGAGAGGACTCGTCTACCTCTC TAGGAGGACT GTTCGGGTAGT CGGCAAGTAAAAAATAGGTTGCCAAT            GAA  
CCCTCTCTC   A                            C          A           C                          ATTAATAATATT   AA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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