SE3020346

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_483
  • Malus domestica
  • SE3020346
  • Mutator
  • MadM7
  • MDC019428.412:6174-6388
  • CTCCAACAC
  • GAACCAGATTCTCTCCGGATCCTTCAAAACTGAGCCCACTAATCAATGAATCCGGACCATTGAATTTGATCAAACGGCTACAAACAAGGGGTCCTCT

Secondary structure and sequence

TSD    TIR
5'



3' 
CTCCAACACA     A                               A                  C       -       A           -----------ACA    G
          GAACC GATTCTCTCCGGATCCTTCAAAACTGAGCCC CTAATCAATGAATCCGGA CATTGAA TTTGATC AACGGCTACAA              AGGG 
          ||||| ||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||| ||||||| |||||||||||              |||| T
          CTTGG CTAGGGGAGGCCTAGGAAGTTTTGACTCGGG GATTAGTTACTTAGGCCT GTAACTT AAACTAG TTGCTGATGTT              TCTC 
CACAACCTCC     C                               A                  A       T       G           AATAATATTGAAAA    C
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

Copyright ©.   Contact us: contact@pmite.com   京ICP备2022028499号-3