SE3020347

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_484
  • Malus domestica
  • SE3020347
  • Mutator
  • MadM75
  • MDC010848.361:11105-11881
  • TATTTTGAA
  • AGGATTAAGTACTCAAAACTTCCTAAACTTTCAGTGT

Secondary structure and sequence

TSD    TIR
5'



3'
TATTTTGA             CA    TT   A      -C     CAATC    ATC                                     G  -A      T C  C        ----         - AAAAATCTGTTAAATTAACTAGGGCTAACTTTGTCTCCAAATTAATAGAAAGTCATGGAAGCAAAGCCTCCACCAATTAACGGTCACCACCACTCTCATCATGCCATTACCTCTAAACCCAACGCAAAACCACAACTCCACCCTACAACTCAAGCCGCCAACATCGAGAAAAATGTCATAGATGTTGCTGAAATGGTATAGACTGCCATGATGCGGCCACTACAATCATCACTATCTACAAAGAAGAACTGAAATCT
        AGGATTAAGTACT  AAAC  CCT AACTTT  AGTGT     CAAA   GTCTTAACCTTTTTAAACATTCCAAATAAGTACCCAA CT  TTGAAA G CA ATCCGTTG    AGCCCCAGA T                                                                                                                                                                                                                                                                 
        |||||||||||||  ||||  ||| ||||||  |||||     ||||   ||||||||||||||||||||||||||||||||||||| ||  |||||| | || ||||||||    ||||||||| |                                                                                                                                                                                                                                                                 T
        TCCTAATTCATGG  TTTG  GGA TTGGAA  TCACA     GTTT   CAGAGTTGGAAAAGTTTGTAAGGTTTGTTCATGGGTT GA  AATTTT C GT TAGGCAAT    GGTCAATTA A                                                                                                                                                                                                                                                                 
AAGTTTTA             AA    -T   G      AA     ATAAA    GAT                                     G  AA      T A  A        TCAA         A GAGTTTGTATCCAATATAAGTTTTGGGTGGTTGACCCTATAGTACTAGTTGTAATTATAATCAACAGAGGTTTAGATTTAAAGTTTGTATGTAATATATTATACCTTGGGGTACTAGTTTGTCCATAACTTAACCTAGTTTTTACCTGGGTATAACTTTAATGTAATCCTCCTGTTAGAGGATTTTCTTACAATTTTAAGTCTATCCCAAAGTTCCTCGAACAAAGACGAGTACAGTAAAGGAGTAAGCGAGAGCAT

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End