SE3020356

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_493
  • Malus domestica
  • SE3020356
  • Mutator
  • MadM15
  • MDC001226.182:10123-10339
  • GTCACACCC
  • CGGAAAGGGATCCTCTCTGGATCCCTTCTTCCTAATTCACCAAGTCCGGAGATCTGAACCGTTGAAATTTGATCCAACGGCTA

Secondary structure and sequence

TSD    TIR
5'



3' 
GTCACACC                                     CAC     C   A      A                          ACGTTATTATAATTTT    GT  A
        CGGAAAGGGATCCTCTCTGGATCCCTTCTTCCTAATT   CAAGT CGG GATCTG ACCGTTGAAATTTGATCCAACGGCTA                TAAA  GG 
        |||||||||||||||||||||||||||||||||||||   ||||| ||| |||||| ||||||||||||||||||||||||||                ||||  || C
        GCCTTTCCCTAGGAGAGGCCTAGGGAAGGAGGATTAG   GTTCA GCC CTAGGC TGGTAACTTTAAACTAGGTTGCCGAT                GTTT  CC 
CCCAAACT                                     ATA     A   C      C                          ----------------    GT  C
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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