Plant MITE

SE3020358

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_495
Malus domestica
SE3020358
Mutator
MadM27
MDC009859.245:6362-6578
TATCTATGG
CTATGGGGAATTGGATCCTCTCCGAGGCAATGCCTCGGGATCTTACTGATTGGACAATATGGACCGTTAYATTTTGATCCAACGGTTACAAATAGAG

Secondary structure and sequence

TSD TIR

5'

3'

TAT      ---                     C                                   CC   AY        CC           ------------A     GA
   CTATGG   GGAATTGGATCCTCTCCGAGG AATGCCTCGGGATCTTACTGATTGGACAATATGGA  GTT  ATTTTGAT  AACGGTTACAA             TAGAG  
   ||||||   ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||  |||  ||||||||  |||||||||||             |||||  T
   GGTATC   CCTTAACCTAGGAGAGGCTCC TTACGGAGCCCTAGAATGACTAGCCTGTTGTACCT  CAA  TAAAACTA  TTGCCGATGTT             ATCTC  
         TAT                     C                                   AA   CC        TA           AATAATATTGAAA     TC

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3020358

TATCTATGGGGAATTGGATCCTCTCCGAGGCAATGCCTCGGGATCTTACTGATTGGACAATATGGACCGTTAYATTTTGATCCAACGGTTACAAATAGAGGATCTCTCTAAAAGTTATAATAATTGTAGCCGTTATATCAAAATCCAACAATCCATGTTGTCCGATCAGTAAGATCCCGAGGCATTCCCTCGGAGAGGATCCAATTCCTATCTATGG

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