Plant MITE

SE3020360

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_497
Malus domestica
SE3020360
Mutator
MadM43
MDC006823.351:5876-6112
CATACCGAA
GGACTTGGATTGTCTGCCCTCCCATTTCAGTGCCCTTCCCGTGCCTTCCTGTTTTGTGTGGTCACGGTTAAGCCACGTTAATATTTTATATTATTTTTTAT

Secondary structure and sequence

TSD TIR

5'

3'

CATACCGAA                     CC   TCA          C               G                                       -----------      AAA
         GGACTTGGATTGTCTGCCCTC  ATT   GTGCCCTTCC GTGCCTTCCTGTTTT TGTGGTCACGGTTAAGCCACGTTAATATTTTATATTATT           TTTTAT   
         |||||||||||||||||||||  |||   |||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||           ||||||   A
         CCTGAACCTAACAGACGGGAG  TAA   CACGGGAGGG CATGGGAGGACAAAA ACACCAGTGCCAATTCGGTGCAGTTGTAAAATATAATGA           AAAATA   
AAGCCATAC                     AT   CAC          A               -                                       TAAAGAAAAAC      ATA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3020360

CATACCGAAGGACTTGGATTGTCTGCCCTCCCATTTCAGTGCCCTTCCCGTGCCTTCCTGTTTTGTGTGGTCACGGTTAAGCCACGTTAATATTTTATATTATTTTTTATAAAAATAATAAAACAAAAAGAAATAGTAATATAAAATGTTGACGTGGCTTAACCGTGACCACAAAAACAGGAGGGTACAGGGAGGGCACCACAATTAGAGGGCAGACAATCCAAGTCCCATACCGAA

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