Plant MITE

SE3020362

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_499
Malus domestica
SE3020362
Mutator
MadM11
MDC001544.220:2781-2946
TTTAAAGTA
TTTAAAGTAGGGGTGTGATATCCACACATCATATTTTACTTCTCACACACCTTTT

Secondary structure and sequence

TSD TIR

5'

3'

        AGT         A            A  TT                    -TAAT      C  TCG    GGATGAA
   TTTAA   AGGGGTGTG TATCCACACATC TA  TTACTTCTCACACACCTTTT     TTTCGG CT   GATC       
   |||||   ||||||||| |||||||||||| ||  ||||||||||||||||||||     |||||| ||   ||||       T
   AAATT   TCCCCACAC ATAGGTGTGTGG GT  AATGAAGAGTGTGTGGGAAA     AAAGCC GA   CTAG       
ATG     ---         G            G  TT                    CAATT      A  CAA    AAGAAGT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3020362

TTTAAAGTAGGGGTGTGATATCCACACATCATATTTTACTTCTCACACACCTTTTTAATTTTCGGCCTTCGGATCGGATGAATTGAAGAAGATCAACAGACCGAAATTAACAAAGGGTGTGTGAGAAGTAATTTGGGGTGTGTGGATAGCACACCCCTTTAAAGTA

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