SE3020363

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_500
  • Malus domestica
  • SE3020363
  • Mutator
  • MadM77
  • MDC017634.105:33676-33890
  • GGGCACCTG
  • GGGCACCTGGGACATGGATCCTCTCCGGCTCCATGCATCCTAATCCTAGGGATTCACCAATCCGGATCATTGAAATTTGATCAAACGGTTACAAATAT

Secondary structure and sequence

TSD    TIR
5'



3' 
    CA     G         C       C          C     C          C                         A        C  A   GGGCC   TT
 GGG  CCTGG ACATGGATC TCTCCGG TCCATGCATC TAATC TAGGGATTCA CAATCCGGATCATTGAAATTTGATC AACGGTTA AA TAT     ACT  
 |||  ||||| ||||||||| ||||||| |||||||||| ||||| |||||||||| ||||||||||||||||||||||||| |||||||| || |||     |||   
 TCC  GGGCC TGTACCTAG AGAGGCC AGGTACGTAG ATTAG ATCCCTAAGT GTTAGGCTTGGTAACTTTAAACTAG TTGCCAAT TT ATA     TGA  
G   AC     -         A       T          T     A          A                         G        T  A   -ATAT   AA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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