Plant MITE

SE3020365

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_502
Malus domestica
SE3020365
Mutator
MadM31
MDC022894.369:12126-12355
AGAACACAT
ATGAGGATCCTCTCCAGATACTCTTTGTCAG

Secondary structure and sequence

TSD TIR

5'

3'

AGAACACATGA               A  TA        C  CATCATGA   C        ATCTC               A      --AAAAAAAT   -   AATACTTTTATTTAA
           ATGAGGATCCTCTCC GA  CTCTTTGT AG        GAT CTCAAATT     CGTTTATCGTATATT TGCGGT          ATT TTA               
           ||||||||||||||| ||  |||||||| ||        ||| ||||||||     ||||||||||||||| ||||||          ||| |||                
           TACTCCTAGGAGAGG CT  GAGAAACA TC        CTA GAGTTTAG     GCAAATAGCATATAG ACGCCA          GTC ATG               
TACACAAGATA               -  AG        T  --------   A        CACAA               C      GTTAAAAACA   C   ATAAGTATAGATTAA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3020365

AGAACACATGAATGAGGATCCTCTCCAGATACTCTTTGTCAGCATCATGAGATCCTCAAATTATCTCCGTTTATCGTATATTATGCGGTAAAAAAATATTTTAAATACTTTTATTTAAAATTAGATATGAATAGTACCTGACAAAAATTGACCGCACGATATACGATAAACGAACACGATTTGAGAATCCTTACAAAGAGGATCGGAGAGGATCCTCATATAGAACACAT

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